2GM1	Cell Cycle	date	Apr 05, 2006
title	Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With And N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-Oxo-3,4- Dihydropyrrolo[2,1-F][1,2,4]Triazin-2-Yl)(Cyclopropyl)Methy Methylbenzamide
authors	S.Sheriff
compound		source
Molecule: Kinesin-Related Motor Protein Eg5 Chain: A, B, D, E Fragment: Residues 1-368 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Eg5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 43d
symmetry	Space Group: P 1 21 1	R_factor 0.230 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.700 112.600 108.100 90.00 90.20 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	2AZ, ADP, MG	enzyme
Gene Ontology	Chain Function Process Component A, D, E, B
Primary reference	Synthesis and SAR of pyrrolotriazine-4-one based Eg5 inhibitors., Kim KS, Lu S, Cornelius LA, Lombardo LJ, Borzilleri RM, Schroeder GM, Sheng C, Rovnyak G, Crews D, Schmidt RJ, Williams DK, Bhide RS, Traeger SC, McDonnell PA, Mueller L, Sheriff S, Newitt JA, Pudzianowski AT, Yang Z, Wild R, Lee FY, Batorsky R, Ryder JS, Ortega-Nanos M, Shen H, Gottardis M, Roussell DL, Bioorg Med Chem Lett. 2006 Aug 1;16(15):3937-42. Epub 2006 May 30. PMID:16730979

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk] Biological Unit Coordinates (2gm1.pdb1.gz) 56 Kb Biological Unit Coordinates (2gm1.pdb2.gz) 55 Kb Biological Unit Coordinates (2gm1.pdb3.gz) 56 Kb Biological Unit Coordinates (2gm1.pdb4.gz) 56 Kb LPC: Ligand-Protein Contacts for 2GM1 CSU: Contacts of Structural Units for 2GM1 Likely Quarternary Molecular Structure file(s) for 2GM1 Structure Factors (596 Kb) Retrieve 2GM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GM1 from S2C, [Save to disk] Re-refined 2gm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GM1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GM1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gm1_B] [2gm1] [2gm1_A] [2gm1_E] [2gm1_D] SWISS-PROT database: [P52732] Domain organization of [KIF11_HUMAN] by SWISSPFAM Domain found in 2GM1: [KISc ] by SMART

Other resources with information on 2GM1

Community annotation for 2GM1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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