2GM9	Transferase	date	Apr 06, 2006
title	Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex Thienopyrrole
authors	L.R.Otterbein, A.D.Pannifer, J.Tucker, J.Breed, N.G.Oikonomakos, C.Minshull, S.Rowsell, R.A.Pauptit
compound		source
Molecule: Glycogen Phosphorylase, Muscle Form Chain: A Synonym: Myophosphorylase Ec: 2.4.1.1		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Other_details: Rabbit Muscle
symmetry	Space Group: P 43 21 2	R_factor 0.182 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 126.781 126.781 115.144 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	3TH, PLR	enzyme	Transferase E.C.2.4.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Novel thienopyrrole glycogen phosphorylase inhibitors: synthesis, in vitro SAR and crystallographic studies., Whittamore PR, Addie MS, Bennett SN, Birch AM, Butters M, Godfrey L, Kenny PW, Morley AD, Murray PM, Oikonomakos NG, Otterbein LR, Pannifer AD, Parker JS, Readman K, Siedlecki PS, Schofield P, Stocker A, Taylor MJ, Townsend LA, Whalley DP, Whitehouse J, Bioorg Med Chem Lett. 2006 Nov 1;16(21):5567-71. Epub 2006 Aug 30. PMID:16945526

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (2gm9.pdb1.gz) 276 Kb LPC: Ligand-Protein Contacts for 2GM9 CSU: Contacts of Structural Units for 2GM9 Likely Quarternary Molecular Structure file(s) for 2GM9 Structure Factors (640 Kb) Retrieve 2GM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GM9 from S2C, [Save to disk] Re-refined 2gm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GM9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gm9_A] [2gm9] SWISS-PROT database: [P00489] Domain organization of [PYGM_RABIT] by SWISSPFAM

Other resources with information on 2GM9

Community annotation for 2GM9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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