2GMF Growth Factor date Apr 24, 1996
title Human Granulocyte Macrophage Colony Stimulating Factor
authors D.Rozwarski, K.Diederichs, R.Hecht, T.Boone, P.A.Karplus
compound source
Molecule: Granulocyte-Macrophage Colony-Stimulating Factor
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.520 59.060 126.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
note 2GMF supersedes 1GMF
related structures by homologous chain: 1CSG
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRefined crystal structure and mutagenesis of human granulocyte-macrophage colony-stimulating factor., Rozwarski DA, Diederichs K, Hecht R, Boone T, Karplus PA, Proteins 1996 Nov;26(3):304-13. PMID:8953651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2gmf.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2gmf.pdb2.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2GMF
  • Likely Quarternary Molecular Structure file(s) for 2GMF
  • Structure Factors (153 Kb)
  • Retrieve 2GMF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GMF from S2C, [Save to disk]
  • Re-refined 2gmf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GMF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GMF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GMF, from MSDmotif at EBI
  • Genome occurence of 2GMF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2gmfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2gmfb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gmf_B] [2gmf_A] [2gmf]
  • SWISS-PROT database: [P04141]
  • Domain organization of [CSF2_HUMAN] by SWISSPFAM
  • Domain found in 2GMF: [CSF2 ] by SMART
    • Other resources with information on 2GMF
  • Community annotation for 2GMF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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