2GQ6 Rna date Apr 20, 2006
title Crystal Structure Of An Rna Racemate
authors W.Rypniewski, M.Vallazza, M.Perbandt, S.Klussmann, C.Betzel, V.A.
compound source
Molecule: Rna (5'-R((0c)P(0u)P(0g)P(0g)P(0g)P(0c)P(0 3');
Chain: K, M
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is A 'Spiegelmer' And Occurs I From Thermus Flavus;

Molecule: Rna (5'-R((0c)P(0c)P(0g)P(0c)P(0c)P(0u)P(0 3');
Chain: L, N
Engineered: Yes
Synthetic: Yes
Other_details: This Is A 'Spiegelmer' Of A Sequence From 5s Thermus Flavus
symmetry Space Group: P -1
R_factor
R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.112 37.933 45.290 113.53 100.03 93.55
method X-Ray Diffraction, 2 Modelsresolution 1.30 Å
ligand 0C, 0G, 0U, CA, GOL enzyme
Primary referenceThe first crystal structure of an RNA racemate., Rypniewski W, Vallazza M, Perbandt M, Klussmann S, Delucas LJ, Betzel C, Erdmann VA, Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):659-64. Epub 2006, May 12. PMID:16699193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2gq6.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (2gq6.pdb2.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2GQ6
  • CSU: Contacts of Structural Units for 2GQ6
  • Likely Quarternary Molecular Structure file(s) for 2GQ6
  • Structure Factors (239 Kb)
  • Retrieve 2GQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GQ6 from S2C, [Save to disk]
    • View 2GQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GQ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GQ6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gq6_K] [2gq6_M] [2gq6] [2gq6_L] [2gq6_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2GQ6
  • Community annotation for 2GQ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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