2GQ8 Oxidoreductase date Apr 20, 2006
title Structure Of Sye1, An Oye Homologue From S. Ondeidensis, In With P-Hydroxyacetophenone
authors S.N.Savvides, D.Van Den Hemel
compound source
Molecule: Oxidoreductase, Fmn-Binding
Chain: A
Engineered: Yes
Organism_scientific: Shewanella Oneidensis
Organism_taxid: 211586
Strain: Mr-1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc-Duet1
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.558 83.675 87.485 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand AC6, BOG, FMN, SO4, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLigand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding., van den Hemel D, Brige A, Savvides SN, Van Beeumen J, J Biol Chem. 2006 Sep 22;281(38):28152-61. Epub 2006 Jul 20. PMID:16857682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (2gq8.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2GQ8
  • CSU: Contacts of Structural Units for 2GQ8
  • Likely Quarternary Molecular Structure file(s) for 2GQ8
  • Structure Factors (306 Kb)
  • Retrieve 2GQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GQ8 from S2C, [Save to disk]
  • Re-refined 2gq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GQ8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GQ8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gq8_A] [2gq8]
  • SWISS-PROT database: [Q8EEC8]
  • Domain organization of [Q8EEC8_SHEON] by SWISSPFAM
  • Other resources with information on 2GQ8
  • Community annotation for 2GQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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