OCA Atlas for 2GQU

2GQU

Oxidoreductase

date

Apr 21, 2006

title

Crystal Structure Of Udp-N-Acetylenolpyruvylglucosamine Redu (Murb) From Thermus Caldophilus

authors

S.H.Eom, M.K.Kim

compound

source

Molecule: Udp-N-Acetylenolpyruvylglucosamine Reductase
Chain: A
Ec: 1.1.1.158
Engineered: Yes

Organism_scientific: Thermus Caldophilus
Organism_taxid: 272
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3

symmetry

Space Group: P 1

R_factor

0.170

R_Free

0.223

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
29.817	46.850	48.593	65.26	76.13	84.01

method

X-Ray Diffraction

resolution

1.60 Å

ligand

EPU, FAD

enzyme

Oxidoreductase E.C.1.1.1.158 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Crystal structure of UDP-N-acetylenolpyruvylglucosamine reductase (MurB) from Thermus caldophilus., Kim MK, Cho MK, Song HE, Kim D, Park BH, Lee JH, Kang GB, Kim SH, Im YJ, Lee DS, Eom SH, Proteins. 2006 Nov 21;. PMID:17120230

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]

Biological Unit Coordinates (2gqu.pdb1.gz) 100 Kb

LPC: Ligand-Protein Contacts for 2GQU

CSU: Contacts of Structural Units for 2GQU

Likely Quarternary Molecular Structure file(s) for 2GQU

Structure Factors (420 Kb)

Retrieve 2GQU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2GQU from S2C, [Save to disk]

Re-refined 2gqu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GQU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GQU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2GQU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gqu_A] [2gqu]

SWISS-PROT database: [Q5SJC8]

Domain organization of [MURB_THET8] by SWISSPFAM

Other resources with information on 2GQU

Community annotation for 2GQU at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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