2GSL Structural Genomics, Unknown Function date Apr 26, 2006
title X-Ray Crystal Structure Of Protein Fn1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target
authors F.Forouhar, M.Su, S.Jayaraman, K.Conover, H.Janjua, R.Xiao, T.B.Ac G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomic Consortium (Nesg)
compound source
Molecule: Hypothetical Protein
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Fusobacterium Nucleatum Subsp. Nucleat
Organism_taxid: 190304
Strain: Atcc 25586
Gene: Fn1578
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petxl-10 Gold
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.304 108.751 80.495 90.00 108.59 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • nuclease activity
  • endonuclease activity
  • ribonuclease III activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (2gsl.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2gsl.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (2gsl.pdb3.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2GSL
  • CSU: Contacts of Structural Units for 2GSL
  • Likely Quarternary Molecular Structure file(s) for 2GSL
  • Structure Factors (804 Kb)
  • Retrieve 2GSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GSL from S2C, [Save to disk]
  • Re-refined 2gsl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GSL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GSL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gsl_A] [2gsl_C] [2gsl_D] [2gsl_F] [2gsl] [2gsl_B] [2gsl_E]
  • SWISS-PROT database: [Q8RIL0]
  • Domain organization of [Q8RIL0_FUSNN] by SWISSPFAM
  • Domain found in 2GSL: [RIBOc ] by SMART
    • Other resources with information on 2GSL
  • Community annotation for 2GSL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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