2GTM Transferase date Apr 28, 2006
title Mutated Mouse P38 Map Kinase Domain In Complex With Inhibito 892579
authors R.L.Walter, M.J.Mekel, A.G.Evdokimov, M.E.Pokross, M.Sabat
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Crk1;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Mapk14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.876 73.627 76.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand LID enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe development of novel C-2, C-8, and N-9 trisubstituted purines as inhibitors of TNF-alpha production., Sabat M, Vanrens JC, Clark MP, Brugel TA, Maier J, Bookland RG, Laufersweiler MJ, Laughlin SK, Golebiowski A, De B, Hsieh LC, Walter RL, Mekel MJ, Janusz MJ, Bioorg Med Chem Lett. 2006 Aug 15;16(16):4360-5. Epub 2006 Jun 5. PMID:16750367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2gtm.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2GTM
  • CSU: Contacts of Structural Units for 2GTM
  • Likely Quarternary Molecular Structure file(s) for 2GTM
  • Structure Factors (207 Kb)
  • Retrieve 2GTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GTM from S2C, [Save to disk]
  • Re-refined 2gtm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GTM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GTM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gtm_A] [2gtm]
  • SWISS-PROT database: [P47811]
  • Domain organization of [MK14_MOUSE] by SWISSPFAM
  • Domain found in 2GTM: [S_TKc ] by SMART
  • Other resources with information on 2GTM
  • Community annotation for 2GTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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