2GV2 Ligase date May 02, 2006
title Mdm2 In Complex With An 8-Mer P53 Peptide Analogue
authors C.Schubert, K.Sakurai
compound source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2
Chain: A
Fragment: P53 Binding Domain (Residues: 17-125)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 8-Mer P53 Peptide Analogue
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.660 44.100 59.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 1AC, 6CW, ACE, AIB, PM3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic Analysis of an 8-mer p53 Peptide Analogue Complexed with MDM2., Sakurai K, Schubert C, Kahne D, J Am Chem Soc. 2006 Aug 30;128(34):11000-11001. PMID:16925398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2gv2.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2GV2
  • CSU: Contacts of Structural Units for 2GV2
  • Likely Quarternary Molecular Structure file(s) for 2GV2
  • Structure Factors (78 Kb)
  • Retrieve 2GV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GV2 from S2C, [Save to disk]
  • Re-refined 2gv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GV2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GV2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gv2] [2gv2_B] [2gv2_A]
  • SWISS-PROT database: [Q00987]
  • Domain organization of [MDM2_HUMAN] by SWISSPFAM
  • Other resources with information on 2GV2
  • Community annotation for 2GV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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