2GVY Hydrolase date May 03, 2006
title Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase I With Maltose At 1.8 A Resolution
authors A.Vujicic-Zagar, B.W.Dijkstra
compound source
Molecule: Alpha-Amylase A
Chain: A, B
Synonym: Taka-Amylase A, Taa, 1,4- Alpha-D-Glucan Glucanohy
Ec: 3.2.1.1
Engineered: Yes
Organism_scientific: Aspergillus Oryzae
Organism_taxid: 5062
Gene: Amy1
Expression_system: Aspergillus Oryzae
Expression_system_taxid: 5062
symmetry Space Group: P 1 21 1
R_factor 0.162 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.451 101.149 75.185 90.00 103.89 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BGC, CA, GLC, NAG enzyme Hydrolase E.C.3.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMonoclinic crystal form of Aspergillus niger alpha-amylase in complex with maltose at 1.8 angstroms resolution., Vujicic-Zagar A, Dijkstra BW, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Aug 1;62(Pt, 8):716-21. Epub 2006 Jul 24. PMID:16880540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2gvy.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (2gvy.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2GVY
  • CSU: Contacts of Structural Units for 2GVY
  • Likely Quarternary Molecular Structure file(s) for 2GVY
  • Structure Factors (626 Kb)
  • Retrieve 2GVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVY from S2C, [Save to disk]
  • Re-refined 2gvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gvy_A] [2gvy_B] [2gvy]
  • SWISS-PROT database: [P0C1B3]
  • Domain organization of [AMYA1_ASPOR] by SWISSPFAM
  • Domain found in 2GVY: [Aamy ] by SMART
  • Other resources with information on 2GVY
  • Community annotation for 2GVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science