4V4W	Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143	date
authors	Mitra, K., Frank, J.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	15.00
note	4V4W supersedes 2GYB, 2GYC
Gene Ontology	Chain Function Process Component AB AC AD AE AF AG AH AI AJ AK AL AM AN AO mRNA binding involved in pos... AP nuclease activity endonuclease activity endodeoxyribonuclease activi... AQ AR AS AT ornithine decarboxylase inhi... B1 B2 B5, B3 BA BB BC BD BE BF BG BH BI BJ BK BL BM BN BO translation repressor activi... BQ BR BS BT BU BW BX BZ
Primary reference	Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements., Mitra K, Schaffitzel C, Fabiola F, Chapman MS, Ban N, Frank J, Mol Cell. 2006 May 19;22(4):533-43. PMID:16713583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (915 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V4W Retrieve 4V4W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V4W from S2C, [Save to disk]

View 4V4W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V4W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v4w_AG] [4v4w_BX] [4v4w_AN] [4v4w_AR] [4v4w_BH] [4v4w_BU] [4v4w] [4v4w_BM] [4v4w_B0] [4v4w_AF] [4v4w_BD] [4v4w_B1] [4v4w_BF] [4v4w_B2] [4v4w_AV] [4v4w_BJ] [4v4w_AH] [4v4w_AD] [4v4w_AT] [4v4w_BB] [4v4w_BE] [4v4w_BK] [4v4w_AQ] [4v4w_BW] [4v4w_AJ] [4v4w_BZ] [4v4w_BN] [4v4w_AK] [4v4w_AS] [4v4w_AA] [4v4w_AO] [4v4w_BR] [4v4w_AE] [4v4w_BS] [4v4w_B3] [4v4w_BA] [4v4w_AB] [4v4w_BQ] [4v4w_AP] [4v4w_AW] [4v4w_BT] [4v4w_AI] [4v4w_AL] [4v4w_BO] [4v4w_AU] [4v4w_BI] [4v4w_BL] [4v4w_AC] [4v4w_BC] [4v4w_B9] [4v4w_B5] [4v4w_BG] [4v4w_AM] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V4W: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 4V4W

Community annotation for 4V4W at PDBWiki (http://pdbwiki.org)

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