2GZ3 Oxidoreductase date May 10, 2006
title Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh) Fr Streptococcus Pneumoniae Complexed With Nadp And Aspartate- Semialdehyde
authors C.R.Faehnle, J.Le Coq, X.Liu, R.E.Viola
compound source
Molecule: Aspartate Beta-Semialdehyde Dehydrogenase
Chain: A, B, C, D
Ec: 1.2.1.11
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Asd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 28a
symmetry Space Group: P 1
R_factor 0.211 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.348 64.439 96.739 89.98 81.06 82.00
method X-Ray Diffractionresolution 2.10 Å
ligand AS2, NAP enzyme Oxidoreductase E.C.1.2.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceExamination of key intermediates in the catalytic cycle of aspartate-beta-semialdehyde dehydrogenase from a gram-positive infectious bacteria., Faehnle CR, Le Coq J, Liu X, Viola RE, J Biol Chem. 2006 Oct 13;281(41):31031-40. Epub 2006 Aug 8. PMID:16895909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (2gz3.pdb1.gz) 434 Kb
  • Biological Unit Coordinates (2gz3.pdb2.gz) 217 Kb
  • Biological Unit Coordinates (2gz3.pdb3.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 2GZ3
  • CSU: Contacts of Structural Units for 2GZ3
  • Likely Quarternary Molecular Structure file(s) for 2GZ3
  • Structure Factors (1405 Kb)
  • Retrieve 2GZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GZ3 from S2C, [Save to disk]
  • Re-refined 2gz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gz3_B] [2gz3_C] [2gz3_D] [2gz3] [2gz3_A]
  • SWISS-PROT database: [Q97R26]
  • Domain organization of [Q97R26_STRPN] by SWISSPFAM
  • Domain found in 2GZ3: [Semialdhyde_dh ] by SMART
  • Other resources with information on 2GZ3
  • Community annotation for 2GZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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