2GZ7 Hydrolase date May 11, 2006
title Structure-Based Drug Design And Structural Biology Study Of Nonpeptide Inhibitors Of Sars-Cov Main Protease
authors I.L.Lu, S.Y.Wu
compound source
Molecule: Replicase Polyprotein 1ab
Chain: A
Fragment: 3c-Like Proteinase
Synonym: Sars-Cov Main Protease, Pp1ab, Orf1ab
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Sars Coronavirus
Organism_taxid: 227859
Strain: Sars
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32xalic
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.776 82.777 53.579 90.00 104.93 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand D3F BindingDB enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based drug design and structural biology study of novel nonpeptide inhibitors of severe acute respiratory syndrome coronavirus main protease., Lu IL, Mahindroo N, Liang PH, Peng YH, Kuo CJ, Tsai KC, Hsieh HP, Chao YS, Wu SY, J Med Chem. 2006 Aug 24;49(17):5154-61. PMID:16913704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2gz7.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2GZ7
  • CSU: Contacts of Structural Units for 2GZ7
  • Likely Quarternary Molecular Structure file(s) for 2GZ7
  • Structure Factors (568 Kb)
  • Retrieve 2GZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GZ7 from S2C, [Save to disk]
  • Re-refined 2gz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GZ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GZ7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gz7] [2gz7_A]
  • SWISS-PROT database: [P0C6X7] [P0C6U8]
  • Domain organization of [R1AB_CVHSA] [R1A_CVHSA] by SWISSPFAM
  • Other resources with information on 2GZ7
  • Community annotation for 2GZ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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