2H0R Hydrolase date May 15, 2006
title Structure Of The Yeast Nicotinamidase Pnc1p
authors A.B.Taylor, G.Hu, P.J.Hart, L.Mcalister-Henn
compound source
Molecule: Nicotinamidase
Chain: A, B, C, D, E, F, G
Synonym: Nicotine Deamidase, Namase
Ec: 3.5.1.19
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Mmyo11
symmetry Space Group: H 3
R_factor 0.189 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
302.040 302.040 112.120 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand ZN enzyme Hydrolase E.C.3.5.1.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B
  • chromatin silencing at telom...

    • Primary referenceCrystal structure of the yeast nicotinamidase Pnc1p., Hu G, Taylor AB, McAlister-Henn L, Hart PJ, Arch Biochem Biophys. 2007 May 1;461(1):66-75. Epub 2007 Mar 2. PMID:17382284
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (2h0r.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb4.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb5.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb6.gz) 37 Kb
  • Biological Unit Coordinates (2h0r.pdb7.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2H0R
  • CSU: Contacts of Structural Units for 2H0R
  • Likely Quarternary Molecular Structure file(s) for 2H0R
  • Structure Factors (697 Kb)
  • Retrieve 2H0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H0R from S2C, [Save to disk]
  • Re-refined 2h0r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H0R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H0R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h0r_A] [2h0r_G] [2h0r_D] [2h0r_F] [2h0r_C] [2h0r] [2h0r_E] [2h0r_B]
  • SWISS-PROT database: [P53184]
  • Domain organization of [PNC1_YEAST] by SWISSPFAM
    • Other resources with information on 2H0R
  • Community annotation for 2H0R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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