2H3H Sugar Binding Protein date May 22, 2006
title Crystal Structure Of The Liganded Form Of Thermotoga Maritim Binding Protein
authors A.Changela, Y.Tian
compound source
Molecule: Sugar Abc Transporter, Periplasmic Sugar-Binding
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm0114
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.200 46.060 118.400 90.00 108.22 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BGC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein., Tian Y, Cuneo MJ, Changela A, Hocker B, Beese LS, Hellinga HW, Protein Sci. 2007 Oct;16(10):2240-50. Epub 2007 Aug 31. PMID:17766373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (2h3h.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2h3h.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2H3H
  • CSU: Contacts of Structural Units for 2H3H
  • Likely Quarternary Molecular Structure file(s) for 2H3H
  • Structure Factors (617 Kb)
  • Retrieve 2H3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H3H from S2C, [Save to disk]
  • Re-refined 2h3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H3H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H3H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h3h] [2h3h_A] [2h3h_B]
  • SWISS-PROT database: [Q9WXW9]
  • Domain organization of [Q9WXW9_THEMA] by SWISSPFAM
    • Other resources with information on 2H3H
  • Community annotation for 2H3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science