2H5O Luminescent Protein date May 26, 2006
title Crystal Structure Of Morange
authors X.Shu, S.J.Remington
compound source
Molecule: Morange
Chain: A, B
Engineered: Yes
 Fragment: Coral
Organism_scientific: Discosoma Sp.
Organism_taxid: 86600
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.297 62.353 107.783 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.08 Å
ligand CRO, MG enzyme
note 2H5O (Molecule of the Month:pdb174)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel Chromophores and Buried Charges Control Color in mFruits(,)., Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ, Biochemistry. 2006 Aug 15;45(32):9639-9647. PMID:16893165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2h5o.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (2h5o.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2H5O
  • CSU: Contacts of Structural Units for 2H5O
  • Likely Quarternary Molecular Structure file(s) for 2H5O
  • Structure Factors (1437 Kb)
  • Retrieve 2H5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H5O from S2C, [Save to disk]
  • Re-refined 2h5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H5O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H5O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h5o] [2h5o_B] [2h5o_A]
  • SWISS-PROT database: [D0VWW2] [Q9U6Y8]
  • Domain organization of [D0VWW2_DISSP] [RFP_DISSP] by SWISSPFAM
    • Other resources with information on 2H5O
  • Community annotation for 2H5O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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