2H5Q Luminescent Protein date May 26, 2006
title Crystal Structure Of Mcherry
authors X.Shu, S.J.Remington
compound source
Molecule: Mcherry
Chain: A
Engineered: Yes
 Fragment: Coral
Organism_scientific: Discosoma Sp.
Organism_taxid: 86600
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.762 42.855 61.057 90.00 112.31 90.00
method X-Ray Diffractionresolution 1.36 Å
ligand CH6 enzyme
note 2H5Q (Molecule of the Month:pdb174)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel Chromophores and Buried Charges Control Color in mFruits(,)., Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ, Biochemistry. 2006 Aug 15;45(32):9639-9647. PMID:16893165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2h5q.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2H5Q
  • CSU: Contacts of Structural Units for 2H5Q
  • Likely Quarternary Molecular Structure file(s) for 2H5Q
  • Structure Factors (481 Kb)
  • Retrieve 2H5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H5Q from S2C, [Save to disk]
  • Re-refined 2h5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H5Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H5Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h5q_A] [2h5q]
  • SWISS-PROT database: [Q5S3G8]
  • Domain organization of [Q5S3G8_9CNID] by SWISSPFAM
    • Other resources with information on 2H5Q
  • Community annotation for 2H5Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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