2H6R Isomerase date Jun 01, 2006
title Crystal Structure Of Triosephosphate Isomerase (Tim) From Methanocaldococcus Jannaschii
authors P.Gayathri, M.Banerjee, A.Vijayalakshmi, H.Balaram, P.Balaram, M.R.N.Murthy
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B, C, D, E, F, G, H
Synonym: Tim, Triose-Phosphate Isomerase
Ec: 5.3.1.1
Engineered: Yes
Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Dsm 2661
Gene: Tpia
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Aa200
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: P 31
R_factor 0.213 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.340 139.340 80.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Isomerase E.C.5.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii., Gayathri P, Banerjee M, Vijayalakshmi A, Azeez S, Balaram H, Balaram P, Murthy MR, Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):206-20. Epub 2007, Jan 16. PMID:17242514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (2h6r.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (2h6r.pdb2.gz) 122 Kb
  • CSU: Contacts of Structural Units for 2H6R
  • Likely Quarternary Molecular Structure file(s) for 2H6R
  • Structure Factors (868 Kb)
  • Retrieve 2H6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H6R from S2C, [Save to disk]
  • Re-refined 2h6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H6R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H6R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h6r_G] [2h6r_F] [2h6r_H] [2h6r_E] [2h6r_B] [2h6r_D] [2h6r] [2h6r_A] [2h6r_C]
  • SWISS-PROT database: [Q58923]
  • Domain organization of [TPIS_METJA] by SWISSPFAM
  • Other resources with information on 2H6R
  • Community annotation for 2H6R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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