2H90 Oxidoreductase date Jun 08, 2006
title Xenobiotic Reductase A In Complex With Coumarin
authors H.Dobbek
compound source
Molecule: Xenobiotic Reductase A
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Gene: Xena
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.191 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.570 83.350 156.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand BU3, COU, FMN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceXenobiotic reductase A in the degradation of quinoline by Pseudomonas putida 86: physiological function, structure and mechanism of 8-hydroxycoumarin reduction., Griese JJ, P Jakob R, Schwarzinger S, Dobbek H, J Mol Biol. 2006 Aug 4;361(1):140-52. Epub 2006 Jun 21. PMID:16822524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2h90.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 2H90
  • CSU: Contacts of Structural Units for 2H90
  • Likely Quarternary Molecular Structure file(s) for 2H90
  • Structure Factors (660 Kb)
  • Retrieve 2H90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H90 from S2C, [Save to disk]
  • Re-refined 2h90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H90
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H90, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h90] [2h90_A]
  • SWISS-PROT database: [Q88NF7]
  • Domain organization of [Q88NF7_PSEPK] by SWISSPFAM
    • Other resources with information on 2H90
  • Community annotation for 2H90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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