2HC5 Structural Genomics, Unknown Function date Jun 15, 2006
title Solution Nmr Structure Of Protein Yvyc From Bacillus Subtili Northeast Structural Genomics Consortium Target Sr482.
authors A.Eletsky, G.Liu, H.S.Atreya, D.K.Sukumaran, D.Wang, K.Cunningham H.Janjua, L.C.Ma, R.Xiao, J.Liu, M.Baran, T.B.Acton, B.Rost, G.T.Montelione, T.Szyperski, Northeast Structural Genomics Co (Nesg)
compound source
Molecule: Hypothetical Protein Yvyc
Chain: A
Synonym: Orf 99
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Yvyc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
methodSolution NMR
Primary referenceNMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families., Eletsky A, Sukumaran DK, Xiao R, Acton TB, Rost B, Montelione GT, Szyperski T, Proteins. 2009 Sep;76(4):1037-41. PMID:19455708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (639 Kb) [Save to disk]
  • Biological Unit Coordinates (2hc5.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2HC5
  • Original NMR restraints for 2HC5 from PDB
  • Retrieve 2HC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HC5 from S2C, [Save to disk]
    • View 2HC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HC5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HC5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hc5] [2hc5_A]
  • SWISS-PROT database: [P39737]
  • Domain organization of [YVYC_BACSU] by SWISSPFAM
    • Other resources with information on 2HC5
  • Community annotation for 2HC5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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