2HCZ Allergen date Jun 19, 2006
title Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Gr Pollen Allergen From Maize
authors N.H.Yennawar, D.J.Cosgrove
compound source
Molecule: Beta-Expansin 1a
Chain: X
Synonym: Pollen Allergen Zea M 1, Zea M I
Organism_scientific: Zea Mays
Organism_taxid: 4577
Tissue: Pollen
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.408 44.512 69.467 90.00 124.64 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand FCA, HYP, MAN, NAG, XYS enzyme
note 2HCZ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceCrystal structure and activities of EXPB1 (Zea m 1), a beta-expansin and group-1 pollen allergen from maize., Yennawar NH, Li LC, Dudzinski DM, Tabuchi A, Cosgrove DJ, Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14664-71. Epub 2006 Sep 19. PMID:16984999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2hcz.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2HCZ
  • CSU: Contacts of Structural Units for 2HCZ
  • Likely Quarternary Molecular Structure file(s) for 2HCZ
  • Structure Factors (58 Kb)
  • Retrieve 2HCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HCZ from S2C, [Save to disk]
  • Re-refined 2hcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HCZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HCZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hcz] [2hcz_X]
  • SWISS-PROT database: [P58738]
  • Domain organization of [EXPB1_MAIZE] by SWISSPFAM
  • Domain found in 2HCZ: [DPBB_1 ] by SMART
  • Other resources with information on 2HCZ
  • Community annotation for 2HCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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