2HD0	Hydrolase	date	Jun 19, 2006
title	Structure Of The Catalytic Domain Of Hepatitis C Virus Ns2
authors	I.C.Lorenz, C.M.Rice, J.Marcotrigiano
compound		source
Molecule: Protease Ns2-3 (P23) Chain: A, B, C, D, E, F, G, H, I, J, K, L Fragment: Protease Domain Of Ns2 Ec: 3.4.22.- Engineered: Yes		Organism_scientific: Hepatitis C Virus Organism_taxid: 11103 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 1 21 1	R_factor 0.226 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.812 68.819 125.162 90.00 105.88 90.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand	BOG, DMU	enzyme	Hydrolase E.C.3.4.22 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Structure of the catalytic domain of the hepatitis C virus NS2-3 protease., Lorenz IC, Marcotrigiano J, Dentzer TG, Rice CM, Nature. 2006 Jul 23;. PMID:16862121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (2hd0.pdb1.gz) 43 Kb Biological Unit Coordinates (2hd0.pdb2.gz) 42 Kb Biological Unit Coordinates (2hd0.pdb3.gz) 42 Kb Biological Unit Coordinates (2hd0.pdb4.gz) 42 Kb Biological Unit Coordinates (2hd0.pdb5.gz) 42 Kb Biological Unit Coordinates (2hd0.pdb6.gz) 41 Kb LPC: Ligand-Protein Contacts for 2HD0 CSU: Contacts of Structural Units for 2HD0 Likely Quarternary Molecular Structure file(s) for 2HD0 Structure Factors (1229 Kb) Retrieve 2HD0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HD0 from S2C, [Save to disk] Re-refined 2hd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HD0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HD0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HD0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hd0_A] [2hd0_B] [2hd0_J] [2hd0_F] [2hd0_I] [2hd0_K] [2hd0] [2hd0_G] [2hd0_L] [2hd0_E] [2hd0_D] [2hd0_H] [2hd0_C] SWISS-PROT database: [P27958] Domain organization of [POLG_HCVH] by SWISSPFAM

Other resources with information on 2HD0

Community annotation for 2HD0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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