2HDP Ligase date Jun 20, 2006
title Solution Structure Of Hdm2 Ring Finger Domain
authors M.Kostic, T.Matt, M.Yamout-Martinez, H.J.Dyson, P.E.Wright
compound source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2
Chain: A, B
Fragment: Ring Finger Domain
Synonym: P53-Binding Protein Mdm2
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)(Dnay)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of the Hdm2 C2H2C4 RING, a domain critical for ubiquitination of p53., Kostic M, Matt T, Martinez-Yamout MA, Dyson HJ, Wright PE, J Mol Biol. 2006 Oct 20;363(2):433-50. Epub 2006 Aug 14. PMID:16965791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (675 Kb) [Save to disk]
  • Biological Unit Coordinates (2hdp.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2HDP
  • CSU: Contacts of Structural Units for 2HDP
  • Original NMR restraints for 2HDP from PDB
  • Retrieve 2HDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HDP from S2C, [Save to disk]
  • View 2HDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HDP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HDP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hdp_A] [2hdp] [2hdp_B]
  • SWISS-PROT database: [Q00987]
  • Domain organization of [MDM2_HUMAN] by SWISSPFAM
  • Domain found in 2HDP: [RING ] by SMART
  • Other resources with information on 2HDP
  • Community annotation for 2HDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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