2HDX	Signaling Protein	date	Jun 21, 2006
title	Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In C With Jak2 Ptyr813 Phosphopeptide
authors	J.Hu, S.R.Hubbard
compound		source
Molecule: Sh2-B Ph Domain Containing Signaling Mediator 1 G Isoform; Chain: A, B, C, D, E, F Fragment: Sh2 (Residues: 499-607) Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Sh2bpsm1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Jak2 Protein Chain: G, H, I, J, K, L Engineered: Yes		Synthetic: Yes Other_details: Sequence Occurs Naturally In Mus Musculus (M
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.210 74.190 239.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	PTR	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural Basis for Phosphotyrosine Recognition by the Src Homology-2 Domains of the Adapter Proteins SH2-B and APS., Hu J, Hubbard SR, J Mol Biol. 2006 Aug 4;361(1):69-79. Epub 2006 Jun 16. PMID:16824542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (2hdx.pdb1.gz) 22 Kb Biological Unit Coordinates (2hdx.pdb2.gz) 20 Kb Biological Unit Coordinates (2hdx.pdb3.gz) 20 Kb Biological Unit Coordinates (2hdx.pdb4.gz) 20 Kb Biological Unit Coordinates (2hdx.pdb5.gz) 20 Kb Biological Unit Coordinates (2hdx.pdb6.gz) 21 Kb LPC: Ligand-Protein Contacts for 2HDX CSU: Contacts of Structural Units for 2HDX Likely Quarternary Molecular Structure file(s) for 2HDX Structure Factors (444 Kb) Retrieve 2HDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HDX from S2C, [Save to disk] Re-refined 2hdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HDX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HDX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hdx_C] [2hdx_J] [2hdx_K] [2hdx] [2hdx_A] [2hdx_B] [2hdx_I] [2hdx_L] [2hdx_D] [2hdx_H] [2hdx_G] [2hdx_F] [2hdx_E] SWISS-PROT database: [Q62120] [Q91ZM2] Domain organization of [JAK2_MOUSE] [SH2B1_MOUSE] by SWISSPFAM Domain found in 2HDX: [SH2 ] by SMART

Other resources with information on 2HDX

Community annotation for 2HDX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---