2HEY Cytokine date Jun 22, 2006
title Crystal Structure Of Murine Ox40l Bound To Human Ox40
authors S.G.Hymowitz
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 4
Chain: F, G
Fragment: Extracellular Domain (Residues 51-198)
Synonym: Ox40 Ligand, Ox40l, Cd252 Antigen
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Tnfsf4, Ox40l, Txgp1l
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Hi5

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: R, T
Fragment: Extracellular Domain (Residues 29-170)
Synonym: Ox40l Receptor, Act35 Antigen, Tax Transcriptional Activated Glycoprotein 1 Receptor, Cd134 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf4, Txgp1l
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Hi5
symmetry Space Group: H 3 2
R_factor 0.221 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.729 104.729 478.161 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
note 2HEY is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, G


T, R


Primary referenceThe Crystal Structure of the Costimulatory OX40-OX40L Complex., Compaan DM, Hymowitz SG, Structure. 2006 Aug;14(8):1321-30. PMID:16905106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2hey.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (2hey.pdb2.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2HEY
  • CSU: Contacts of Structural Units for 2HEY
  • Likely Quarternary Molecular Structure file(s) for 2HEY
  • Structure Factors (967 Kb)
  • Retrieve 2HEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HEY from S2C, [Save to disk]
  • Re-refined 2hey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HEY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HEY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hey_F] [2hey_G] [2hey] [2hey_R] [2hey_T]
  • SWISS-PROT database: [P43488] [P43489]
  • Domain organization of [TNFL4_MOUSE] [TNR4_HUMAN] by SWISSPFAM
  • Domains found in 2HEY: [TNF] [TNFR ] by SMART
  • Other resources with information on 2HEY
  • Community annotation for 2HEY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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