2HHK Photosynthesis Membrane Protein date Jun 28, 2006
title Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1 C With Dibrominated Phosphatidylglycerol
authors A.W.Roszak, A.T.Gardiner, N.W.Isaacs, R.J.Cogdell
compound source
Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Strain: R26.1
Other_details: Strain R-26.1 Of Rhodobacter Sphaeroides Bac A Partial Revertant Of The R-26 Chemical Mutant Of The Wild Strain 2.4.1. While R-26 Has No Lh2 Antenna And No Caroteno R-26.1 Has Altered Lh2 Antenna And No Carotenoid. Reaction From R-26.1 Strain Is Therefore Identical With The Wild-Typ 2.4.1 Except For The Missing Carotenoid.;

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Strain: R26.1
Other_details: Strain R-26.1 Of Rhodobacter Sphaeroides Bac A Partial Revertant Of The R-26 Chemical Mutant Of The Wild Strain 2.4.1. While R-26 Has No Lh2 Antenna And No Caroteno R-26.1 Has Altered Lh2 Antenna And No Carotenoid. Reaction From R-26.1 Strain Is Therefore Identical With The Wild-Typ 2.4.1 Except For The Missing Carotenoid.;

Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Strain: R26.1
Other_details: Strain R-26.1 Of Rhodobacter Sphaeroides Bac A Partial Revertant Of The R-26 Chemical Mutant Of The Wild Strain 2.4.1. While R-26 Has No Lh2 Antenna And No Caroteno R-26.1 Has Altered Lh2 Antenna And No Carotenoid. Reaction From R-26.1 Strain Is Therefore Identical With The Wild-Typ 2.4.1 Except For The Missing Carotenoid.
symmetry Space Group: P 31 2 1
R_factor 0.172 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.417 139.417 183.701 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand BCL, BPH, CDL, CL, FE, GOL, K, LDA, PGK, PGT, PO4, U10 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


  • L


    M


    Primary referenceBrominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides., Roszak AW, Gardiner AT, Isaacs NW, Cogdell RJ, Biochemistry. 2007 Mar 20;46(11):2909-16. Epub 2007 Feb 23. PMID:17315985
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2hhk.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 2HHK
  • CSU: Contacts of Structural Units for 2HHK
  • Likely Quarternary Molecular Structure file(s) for 2HHK
  • Structure Factors (522 Kb)
  • Retrieve 2HHK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HHK from S2C, [Save to disk]
  • Re-refined 2hhk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HHK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HHK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HHK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hhk] [2hhk_M] [2hhk_L] [2hhk_H]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
  • Other resources with information on 2HHK
  • Community annotation for 2HHK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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