2HI3 Transcription date Jun 28, 2006
title Solution Structure Of The Homeodomain-Only Protein Hop
authors J.P.Mackay, H.Kook, J.A.Epstein, R.J.Simpson, W.W.Yung
compound source
Molecule: Homeodomain-Only Protein
Chain: A
Synonym: Hop, Homeobox-Only Protein, Odd Homeobox Protein 1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of the structure and function of the transcriptional coregulator HOP., Kook H, Yung WW, Simpson RJ, Kee HJ, Shin S, Lowry JA, Loughlin FE, Yin Z, Epstein JA, Mackay JP, Biochemistry. 2006 Sep 5;45(35):10584-90. PMID:16939210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk]
  • Biological Unit Coordinates (2hi3.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2HI3
  • Retrieve 2HI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HI3 from S2C, [Save to disk]
    • View 2HI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HI3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HI3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hi3] [2hi3_A]
  • SWISS-PROT database: [Q8R1H0]
  • Domain organization of [HOP_MOUSE] by SWISSPFAM
  • Domain found in 2HI3: [HOX ] by SMART
    • Other resources with information on 2HI3
  • Community annotation for 2HI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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