2HI7 Oxidoreductase date Jun 29, 2006
title Crystal Structure Of Dsba-Dsbb-Ubiquinone Complex
authors K.Inaba, S.Murakami, M.Suzuki, A.Nakagawa, E.Yamashita, K.Okada, K
compound source
Molecule: Thiol:Disulfide Interchange Protein Dsba
Chain: A
Synonym: Dsba
Ec: 1.8.4.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe70 (Qiagen)

Molecule: Disulfide Bond Formation Protein B
Chain: B
Synonym: Dsbb, Disulfide Oxidoreductase
Ec: 1.8.5.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe70 (Qiagen)
symmetry Space Group: P 42 21 2
R_factor 0.341 R_Free 0.362
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.500 165.500 65.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
ligand UQ1, ZN enzyme Oxidoreductase E.C.1.8.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein disulfide oxidoreduc...


  • B
  • electron transfer activity


  • Primary referenceCrystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation., Inaba K, Murakami S, Suzuki M, Nakagawa A, Yamashita E, Okada K, Ito K, Cell. 2006 Nov 17;127(4):789-801. PMID:17110337
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2hi7.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2hi7.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2HI7
  • CSU: Contacts of Structural Units for 2HI7
  • Likely Quarternary Molecular Structure file(s) for 2HI7
  • Structure Factors (80 Kb)
  • Retrieve 2HI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HI7 from S2C, [Save to disk]
  • Re-refined 2hi7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HI7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HI7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hi7] [2hi7_A] [2hi7_B]
  • SWISS-PROT database: [P0AEG4] [P0A6M2]
  • Belongs to the disulfide bond oxidoreductase b (dsbb) family according to TCDB.
  • Domain organization of [DSBA_ECOLI] [DSBB_ECOLI] by SWISSPFAM
  • Other resources with information on 2HI7
  • Community annotation for 2HI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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