2HIH Hydrolase date Jun 29, 2006
title Crystal Structure Of Staphylococcus Hyicus Lipase
authors J.J.W.Tiesinga, G.Van Pouderoyen, M.Nardini, B.W.Dijkstra
compound source
Molecule: Lipase 46 Kda Form
Chain: A, B
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Staphylococcus Hyicus
Organism_taxid: 1284
Gene: Lip
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De 3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psht7
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.310 77.960 169.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.86 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
Primary referenceStructural basis of phospholipase activity of Staphylococcus hyicus lipase., Tiesinga JJ, van Pouderoyen G, Nardini M, Ransac S, Dijkstra BW, J Mol Biol. 2007 Aug 10;371(2):447-56. Epub 2007 May 21. PMID:17582438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (2hih.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2hih.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (2hih.pdb3.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 2HIH
  • CSU: Contacts of Structural Units for 2HIH
  • Likely Quarternary Molecular Structure file(s) for 2HIH
  • Structure Factors (184 Kb)
  • Retrieve 2HIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HIH from S2C, [Save to disk]
  • Re-refined 2hih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HIH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HIH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hih] [2hih_B] [2hih_A]
  • SWISS-PROT database: [P04635]
  • Domain organization of [LIP_STAHY] by SWISSPFAM
  • Other resources with information on 2HIH
  • Community annotation for 2HIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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