2HK5 Transferase date Jul 03, 2006
title Hck Kinase In Complex With Lck Targetted Inhibitor Pg-100924
authors R.L.Walter, M.J.Mekel, A.G.Evdokimov, M.E.Pokross, M.P.Sabat
compound source
Molecule: Tyrosine-Protein Kinase Hck
Chain: A
Fragment: Kinase Domian (Residues 246-513)
Synonym: P59-Hckp60-Hck, Hemopoietic Cell Kinase
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hck
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.198 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.977 96.977 69.998 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1BM BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe development of 2-benzimidazole substituted pyrimidine based inhibitors of lymphocyte specific kinase (Lck)., Sabat M, VanRens JC, Laufersweiler MJ, Brugel TA, Maier J, Golebiowski A, De B, Easwaran V, Hsieh LC, Walter RL, Mekel MJ, Evdokimov A, Janusz MJ, Bioorg Med Chem Lett. 2006 Dec 1;16(23):5973-7. Epub 2006 Sep 25. PMID:16997556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2hk5.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2HK5
  • CSU: Contacts of Structural Units for 2HK5
  • Likely Quarternary Molecular Structure file(s) for 2HK5
  • Structure Factors (155 Kb)
  • Retrieve 2HK5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HK5 from S2C, [Save to disk]
  • Re-refined 2hk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HK5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HK5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HK5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hk5] [2hk5_A]
  • SWISS-PROT database: [P08631]
  • Domain organization of [HCK_HUMAN] by SWISSPFAM
  • Domain found in 2HK5: [TyrKc ] by SMART
  • Other resources with information on 2HK5
  • Community annotation for 2HK5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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