2HKD De Novo Protein date Jul 03, 2006
title The Crystal Structure Of Engineered Ospa
authors K.Makabe, V.Terechko, S.Koide
compound source
Molecule: Outer Surface Protein A
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Borreliella Burgdorferi
Organism_common: Lyme Disease Spirochete
Organism_taxid: 139
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.199 76.561 121.312 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic structures of peptide self-assembly mimics., Makabe K, McElheny D, Tereshko V, Hilyard A, Gawlak G, Yan S, Koide A, Koide S, Proc Natl Acad Sci U S A. 2006 Nov 8;. PMID:17093048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2hkd.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2HKD
  • CSU: Contacts of Structural Units for 2HKD
  • Likely Quarternary Molecular Structure file(s) for 2HKD
  • Structure Factors (333 Kb)
  • Retrieve 2HKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HKD from S2C, [Save to disk]
  • Re-refined 2hkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HKD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HKD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hkd_A] [2hkd]
  • SWISS-PROT database: [Q45040]
  • Domain organization of [Q45040_BORBU] by SWISSPFAM
    • Other resources with information on 2HKD
  • Community annotation for 2HKD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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