2HLD	Hydrolase	date	Jul 06, 2006
title	Crystal Structure Of Yeast Mitochondrial F1-Atpase
authors	V.Kabaleeswaran, N.Puri, J.E.Walker, A.G.Leslie, D.M.Mueller
compound		source
Molecule: Atp Synthase Alpha Chain, Mitochondrial Chain: A, B, C, J, K, L, S, T, U Ec: 3.6.3.14		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Organelle: Mitochondria
Molecule: Atp Synthase Beta Chain, Mitochondrial Chain: D, E, F, M, N, O, V, W, X Ec: 3.6.3.14 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Organelle: Mitochondria Gene: Atp2 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prs314
Molecule: Atp Synthase Gamma Chain, Mitochondrial Chain: G, P, Y Ec: 3.6.3.14		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Organelle: Mitochondria
Molecule: Atp Synthase Delta Chain, Mitochondrial Chain: H, Q, Z Ec: 3.6.3.14		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Organelle: Mitochondria
Molecule: Atp Synthase Epsilon Chain, Mitochondrial Chain: I, R, 1 Ec: 3.6.3.14		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Organelle: Mitochondria
symmetry	Space Group: P 1 21 1	R_factor 0.207 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.524 294.132 190.432 90.00 101.67 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ANP, MG, PO4	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
Gene Ontology	Chain Function Process Component 1, R, I F, N, E, V, M, O, W, X, D S, T, K, C, L, A, J, B, U Y, P, G Z, Q, H
Primary reference	Novel features of the rotary catalytic mechanism revealed in the structure of yeast F(1) ATPase., Kabaleeswaran V, Puri N, Walker JE, Leslie AG, Mueller DM, EMBO J. 2006 Nov 15;25(22):5433-42. Epub 2006 Nov 2. PMID:17082766

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1449 Kb) [Save to disk] Biological Unit Coordinates (2hld.pdb1.gz) 503 Kb Biological Unit Coordinates (2hld.pdb2.gz) 491 Kb Biological Unit Coordinates (2hld.pdb3.gz) 475 Kb LPC: Ligand-Protein Contacts for 2HLD CSU: Contacts of Structural Units for 2HLD Likely Quarternary Molecular Structure file(s) for 2HLD Structure Factors (2337 Kb) Retrieve 2HLD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HLD from S2C, [Save to disk] Re-refined 2hld structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HLD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HLD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HLD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hld_B] [2hld_P] [2hld_Z] [2hld_T] [2hld_H] [2hld_U] [2hld_A] [2hld] [2hld_M] [2hld_W] [2hld_J] [2hld_D] [2hld_N] [2hld_O] [2hld_X] [2hld_I] [2hld_1] [2hld_C] [2hld_G] [2hld_K] [2hld_S] [2hld_E] [2hld_Y] [2hld_L] [2hld_R] [2hld_F] [2hld_Q] [2hld_V] SWISS-PROT database: [P21306] [P07251] [P00830] [Q12165] [P38077] Belongs to the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily according to TCDB. Domain organization of [ATP5E_YEAST] [ATPA_YEAST] [ATPB_YEAST] [ATPD_YEAST] [ATPG_YEAST] by SWISSPFAM Domain found in 2HLD: [AAA ] by SMART

Other resources with information on 2HLD

Community annotation for 2HLD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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