2HMM	Oxidoreductase	date	Jul 11, 2006
title	Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To An
authors	D.J.Ferraro, A.L.Okerlund, J.C.Mowers, S.Ramaswamy
compound		source
Molecule: Naphthalene 1,2-Dioxygenase Alpha Subunit Chain: A Synonym: Naphthalene 1,2-Dioxygenase Isp Alpha Ec: 1.14.12.12 Engineered: Yes Mutation: Yes		Organism_scientific: Pseudomonas Sp. Organism_taxid: 306 Gene: Doxb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdtg121
Molecule: Naphthalene 1,2-Dioxygenase Beta Subunit Chain: B Synonym: Naphthalene 1,2-Dioxygenase Isp Beta Ec: 1.14.12.12 Engineered: Yes		Organism_scientific: Pseudomonas Sp. Organism_taxid: 306 Gene: Doxd Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdtg121
symmetry	Space Group: H 3 2	R_factor 0.164 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 139.725 139.725 208.113 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	AN3, EDO, FE, FES, SO4	enzyme	Oxidoreductase E.C.1.14.12.12 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase., Ferraro DJ, Okerlund AL, Mowers JC, Ramaswamy S, J Bacteriol. 2006 Oct;188(19):6986-94. PMID:16980501

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk] Biological Unit Coordinates (2hmm.pdb1.gz) 633 Kb LPC: Ligand-Protein Contacts for 2HMM CSU: Contacts of Structural Units for 2HMM Likely Quarternary Molecular Structure file(s) for 2HMM Structure Factors (853 Kb) Retrieve 2HMM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HMM from S2C, [Save to disk] Re-refined 2hmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HMM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HMM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HMM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hmm_B] [2hmm_A] [2hmm] SWISS-PROT database: [P0A111] [P0A113] Domain organization of [NDOB_PSEU8] [NDOC_PSEU8] by SWISSPFAM

Other resources with information on 2HMM

Community annotation for 2HMM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---