2HPD Oxidoreductase(Oxygenase) date Sep 16, 1993
title Crystal Structure Of Hemoprotein Domain Of P450bm-3, A Proto Microsomal P450'S
authors K.G.Ravichandran, S.S.Boddupalli, C.A.Hasemann, J.A.Peterson, J.Deisenhofer
compound source
Molecule: Cytochrome P450 Bm-3
Chain: A, B
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Expression_system_vector_type: Bacterial
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.400 154.000 62.200 90.00 94.70 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
related structures by homologous chain: 1P0W, 1P0X
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450's., Ravichandran KG, Boddupalli SS, Hasermann CA, Peterson JA, Deisenhofer J, Science 1993 Aug 6;261(5122):731-6. PMID:8342039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2hpd.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (2hpd.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2HPD
  • CSU: Contacts of Structural Units for 2HPD
  • Likely Quarternary Molecular Structure file(s) for 2HPD
  • Retrieve 2HPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HPD from S2C, [Save to disk]
  • View 2HPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HPD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HPD, from MSDmotif at EBI
  • Genome occurence of 2HPD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hpda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2hpdb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hpd_B] [2hpd] [2hpd_A]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
  • Other resources with information on 2HPD
  • Community annotation for 2HPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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