2HUP Signaling Protein date Jul 27, 2006
title Crystal Structure Of Human Rab43 In Complex With Gdp
authors J.Wang, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Ras-Related Protein Rab-43
Chain: A, B
Synonym: Ras-Related Protein Rab-41
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab43
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus (De-3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 32 2 1
R_factor 0.233 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.447 66.447 145.116 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand GDP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2hup.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (2hup.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2HUP
  • CSU: Contacts of Structural Units for 2HUP
  • Likely Quarternary Molecular Structure file(s) for 2HUP
  • Structure Factors (352 Kb)
  • Retrieve 2HUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HUP from S2C, [Save to disk]
  • Re-refined 2hup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HUP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hup] [2hup_A] [2hup_B]
  • SWISS-PROT database: [Q86YS6]
  • Domain organization of [RAB43_HUMAN] by SWISSPFAM
  • Domain found in 2HUP: [RAB ] by SMART
    • Other resources with information on 2HUP
  • Community annotation for 2HUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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