2HV8	Protein Transport	date	Jul 27, 2006
title	Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
authors	S.Eathiraj, A.Mishra, R.Prekeris, D.G.Lambright
compound		source
Molecule: Ras-Related Protein Rab-11a Chain: A, B, C Fragment: Gtpase Domain Synonym: Rab-11, Yl8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet15b
Molecule: Rab11 Family-Interacting Protein 3 Chain: D, E, F Fragment: C-Terminal Region Synonym: Rab11-Fip3, Ef Hands-Containing Rab-Interacting Pr Eferin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11fip3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.203 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 218.291 52.601 70.679 90.00 105.56 90.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand	2ME, GTP, MES, MG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C, B F, D, E
Primary reference	Structural Basis for Rab11-mediated Recruitment of FIP3 to Recycling Endosomes., Eathiraj S, Mishra A, Prekeris R, Lambright DG, J Mol Biol. 2006 Nov 24;364(2):121-35. Epub 2006 Aug 26. PMID:17007872

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (2hv8.pdb1.gz) 83 Kb Biological Unit Coordinates (2hv8.pdb2.gz) 80 Kb LPC: Ligand-Protein Contacts for 2HV8 CSU: Contacts of Structural Units for 2HV8 Likely Quarternary Molecular Structure file(s) for 2HV8 Structure Factors (468 Kb) Retrieve 2HV8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HV8 from S2C, [Save to disk] Re-refined 2hv8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HV8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HV8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HV8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hv8_C] [2hv8] [2hv8_F] [2hv8_A] [2hv8_B] [2hv8_D] [2hv8_E] SWISS-PROT database: [P62491] [O75154] Domain organization of [RB11A_HUMAN] [RFIP3_HUMAN] by SWISSPFAM Domain found in 2HV8: [RAB ] by SMART

Other resources with information on 2HV8

Community annotation for 2HV8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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