2HWL	Hydrolase	date	Aug 01, 2006
title	Crystal Structure Of Thrombin In Complex With Fibrinogen Gam Peptide
authors	A.O.Pineda, Z.W.Chen, F.Marino, F.S.Mathews, M.W.Mosesson, E.Di C
compound		source
Molecule: Prothrombin Chain: A, C Fragment: Thrombin Light Chain Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_organ: Kidney Expression_system_vector_type: Plasmid Expression_system_plasmid: Hpc4-Pnut
Molecule: Prothrombin Chain: B, D Fragment: Thrombin Heavy Chain Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_organ: Kidney Expression_system_vector_type: Plasmid Expression_system_plasmid: Hpc4-Pnut
Molecule: Fibrinogen Gamma' Peptide Chain: P Engineered: Yes		Synthetic: Yes Other_details: The Protein Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.397 81.523 70.256 90.00 109.35 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	NA, NAG, PTR	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Crystal structure of thrombin in complex with fibrinogen gamma' peptide., Pineda AO, Chen ZW, Marino F, Mathews FS, Mosesson MW, Di Cera E, Biophys Chem. 2006 Aug 23;. PMID:16962697

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (2hwl.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 2HWL CSU: Contacts of Structural Units for 2HWL Likely Quarternary Molecular Structure file(s) for 2HWL Structure Factors (237 Kb) Retrieve 2HWL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HWL from S2C, [Save to disk] Re-refined 2hwl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HWL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HWL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HWL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hwl_P] [2hwl_C] [2hwl_A] [2hwl_B] [2hwl_D] [2hwl] SWISS-PROT database: [P02679] [P00734] Domain organization of [FIBG_HUMAN] [THRB_HUMAN] by SWISSPFAM Domain found in 2HWL: [Tryp_SPc ] by SMART

Other resources with information on 2HWL

Community annotation for 2HWL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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