2HWP Transferase date Aug 01, 2006
title Crystal Structure Of Src Kinase Domain In Complex With Coval Inhibitor Pd168393
authors D.Rauh, J.A.Blair, K.M.Shokat
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A, B
Synonym: P60-Src, C-Src, Pp60c-Src
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Src
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.063 63.012 73.692 100.74 89.81 90.20
method X-Ray Diffractionresolution 2.48 Å
ligand DJK BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-guided development of affinity probes for tyrosine kinases using chemical genetics., Blair JA, Rauh D, Kung C, Yun CH, Fan QW, Rode H, Zhang C, Eck MJ, Weiss WA, Shokat KM, Nat Chem Biol. 2007 Apr;3(4):229-238. Epub 2007 Mar 4. PMID:17334377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2hwp.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2hwp.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2HWP
  • CSU: Contacts of Structural Units for 2HWP
  • Likely Quarternary Molecular Structure file(s) for 2HWP
  • Structure Factors (188 Kb)
  • Retrieve 2HWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HWP from S2C, [Save to disk]
  • Re-refined 2hwp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HWP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HWP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hwp] [2hwp_A] [2hwp_B]
  • SWISS-PROT database: [P00523]
  • Domain organization of [SRC_CHICK] by SWISSPFAM
  • Domain found in 2HWP: [TyrKc ] by SMART
  • Other resources with information on 2HWP
  • Community annotation for 2HWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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