2HWR	Ligand Binding Protein	date	Aug 01, 2006
title	Structural Basis For The Structure-Activity Relationships Of Peroxisome Proliferator-Activated Receptor Agonists
authors	Y.H.Peng, I.L.Lu, N.Mahindroo, C.H.Lin, H.P.Hsieh, S.Y.Wu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.233 R_Free 0.316
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.758 89.775 58.773 90.00 90.32 90.00
method	X-Ray Diffraction	resolution	2.34 Å
ligand	DRD BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists., Mahindroo N, Peng YH, Lin CH, Tan UK, Prakash E, Lien TW, Lu IL, Lee HJ, Hsu JT, Chen X, Liao CC, Lyu PC, Chao YS, Wu SY, Hsieh HP, J Med Chem. 2006 Oct 19;49(21):6421-4. PMID:17034149

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (2hwr.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 2HWR CSU: Contacts of Structural Units for 2HWR Likely Quarternary Molecular Structure file(s) for 2HWR Structure Factors (229 Kb) Retrieve 2HWR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HWR from S2C, [Save to disk] Re-refined 2hwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HWR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HWR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HWR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hwr_A] [2hwr_B] [2hwr] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2HWR: [HOLI ] by SMART

Other resources with information on 2HWR

Community annotation for 2HWR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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