2HWU Transferase date Aug 02, 2006
title Crystal Structure Of The Uridine Phosphorylase From Salmonel Typhimurium In Complex With Uridine And Phosphate Ion At 2. Resolution
authors V.I.Timofeev, A.G.Gabdulkhakov, M.V.Dontsova, A.M.Mikhailov
compound source
Molecule: Uridine Phosphorylase
Chain: A, B, C, D, E, F
Synonym: Urdpase, Upase
Ec: 2.4.2.3
Engineered: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 99287
Strain: Lt2
Gene: Udp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbluescript Iisk
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.880 123.990 134.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å
ligand PO4, URI enzyme Transferase E.C.2.4.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (2hwu.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 2HWU
  • CSU: Contacts of Structural Units for 2HWU
  • Structure Factors (278 Kb)
  • Retrieve 2HWU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HWU from S2C, [Save to disk]
  • Re-refined 2hwu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HWU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HWU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HWU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hwu_E] [2hwu_F] [2hwu_D] [2hwu] [2hwu_C] [2hwu_B] [2hwu_A]
  • SWISS-PROT database: [P0A1F6]
  • Domain organization of [UDP_SALTY] by SWISSPFAM
  • Other resources with information on 2HWU
  • Community annotation for 2HWU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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