2HY3 Hydrolase date Aug 04, 2006
title Crystal Structure Of The Human Tyrosine Receptor Phosphate G Complex With Vanadate
authors X.Jin, T.Min, A.Bera, H.Mu, J.M.Sauder, J.C.Freeman, C.Reyes, D.Smi S.R.Wasserman, S.K.Burley, L.Shapiro, New York Sgx Research Ce Structural Genomics (Nysgxrc)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Gamma
Chain: A, B
Fragment: Residues 819-1130
Synonym: Protein-Tyrosine Phosphatase Gamma, R-Ptp-Gamma
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx4
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.173 74.787 82.071 90.00 99.58 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE, VO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2hy3.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (2hy3.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2HY3
  • CSU: Contacts of Structural Units for 2HY3
  • Likely Quarternary Molecular Structure file(s) for 2HY3
  • Structure Factors (161 Kb)
  • Retrieve 2HY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HY3 from S2C, [Save to disk]
  • Re-refined 2hy3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HY3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HY3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hy3_B] [2hy3_A] [2hy3]
  • SWISS-PROT database: [P23470]
  • Domain organization of [PTPRG_HUMAN] by SWISSPFAM
  • Domain found in 2HY3: [PTPc ] by SMART
  • Other resources with information on 2HY3
  • Community annotation for 2HY3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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