2HYD Transport Protein date Aug 05, 2006
title Multidrug Abc Transporter Sav1866
authors R.J.P.Dawson, K.P.Locher
compound source
Molecule: Abc Transporter Homolog
Chain: A, B
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Sav1866
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.255 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.279 103.955 181.013 90.00 97.99 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ADP, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a bacterial multidrug ABC transporter., Dawson RJ, Locher KP, Nature. 2006 Sep 14;443(7108):180-5. Epub 2006 Aug 30. PMID:16943773
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (2hyd.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 2HYD
  • CSU: Contacts of Structural Units for 2HYD
  • Likely Quarternary Molecular Structure file(s) for 2HYD
  • Structure Factors (432 Kb)
  • Retrieve 2HYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HYD from S2C, [Save to disk]
  • Re-refined 2hyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HYD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HYD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hyd_A] [2hyd] [2hyd_B]
  • SWISS-PROT database: [Q99T13]
  • Domain organization of [Y1866_STAAM] by SWISSPFAM
  • Domain found in 2HYD: [AAA ] by SMART
    • Other resources with information on 2HYD
  • Community annotation for 2HYD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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