2I0J Transcription date Aug 10, 2006
title Benzopyrans Are Selective Estrogen Receptor Beta Agonists (S With Novel Activity In Models Of Benign Prostatic Hyperplas
authors Y.Wang
compound source
Molecule: Estrogen Receptor Alpha
Chain: A, B, C, D
Fragment: Steroid Binding Domain
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.503 173.144 58.522 90.00 119.48 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand I0G BindingDB enzyme
Primary referenceBenzopyrans are selective estrogen receptor Beta agonists with novel activity in models of benign prostatic hyperplasia., Norman BH, Dodge JA, Richardson TI, Borromeo PS, Lugar CW, Jones SA, Chen K, Wang Y, Durst GL, Barr RJ, Montrose-Rafizadeh C, Osborne HE, Amos RM, Guo S, Boodhoo A, Krishnan V, J Med Chem. 2006 Oct 19;49(21):6155-7. PMID:17034120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (2i0j.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (2i0j.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2I0J
  • CSU: Contacts of Structural Units for 2I0J
  • Likely Quarternary Molecular Structure file(s) for 2I0J
  • Structure Factors (184 Kb)
  • Retrieve 2I0J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I0J from S2C, [Save to disk]
  • Re-refined 2i0j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I0J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I0J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I0J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i0j_C] [2i0j_A] [2i0j_D] [2i0j_B] [2i0j]
  • SWISS-PROT database: [P03372]
  • Domain organization of [ESR1_HUMAN] by SWISSPFAM
  • Domain found in 2I0J: [HOLI ] by SMART
  • Other resources with information on 2I0J
  • Community annotation for 2I0J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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