2I69 Crystal structure of the West Nile virus envelope glycoprotein date
authors Kanai, R., Modis, Y.
compound source
symmetry
R_factor
R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.11
ligand FUL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes., Kanai R, Kar K, Anthony K, Gould LH, Ledizet M, Fikrig E, Marasco WA, Koski RA, Modis Y, J Virol. 2006 Nov;80(22):11000-8. Epub 2006 Aug 30. PMID:16943291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (2i69.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2I69
  • CSU: Contacts of Structural Units for 2I69
  • Likely Quarternary Molecular Structure file(s) for 2I69
  • Structure Factors (180 Kb)
  • Retrieve 2I69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I69 from S2C, [Save to disk]
  • Re-refined 2i69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I69
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I69, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i69] [2i69_A]
  • SWISS-PROT database: [Q8JU43]
  • Domain organization of [Q8JU43_WNV] by SWISSPFAM
  • Other resources with information on 2I69
  • Community annotation for 2I69 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science