2ICH CRYSTAL STRUCTURE OF A PUTATIVE ATTH (NE1406) FROM NITROSOMONAS EUROPAEA AT 2.00 A RESOLUTION date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand GOL, MSE, NHE, SO4 enzyme
Gene NP
Primary referenceStructure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism., Chiu HJ, Bakolitsa C, Skerra A, Lomize A, Carlton D, Miller MD, Krishna SS, Abdubek P, Astakhova T, Axelrod HL, Clayton T, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Paulsen J, Reyes R, Rife CL, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1153-9. Epub 2009 Dec 8. PMID:20944205
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2ich.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2ich.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2ICH
  • CSU: Contacts of Structural Units for 2ICH
  • Likely Quarternary Molecular Structure file(s) for 2ICH
  • Structure Factors (6176 Kb)
  • Retrieve 2ICH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ICH from S2C, [Save to disk]
  • Re-refined 2ich structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ICH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ICH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ICH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ich_B] [2ich] [2ich_A]
  • SWISS-PROT database: [Q82US3]
  • Domain organization of [Q82US3_NITEU] by SWISSPFAM
    • Other resources with information on 2ICH
  • Community annotation for 2ICH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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