2IF5 Transcription date Sep 20, 2006
title Structure Of The Poz Domain Of Human Lrf, A Master Regulator Oncogenesis
authors F.D.Schubot, D.S.Waugh, J.Tropea
compound source
Molecule: Zinc Finger And Btb Domain-Containing Protein 7a
Chain: A
Fragment: Btbpoz-Domain, Residues 9-128
Synonym: Leukemialymphoma- Related Factor, Factor That Bin Inducer Of Short Transcripts Protein 1, Factor Binding Ist Fbi-1, Hiv-1 1st-Binding Protein 1, Ttf-I-Interacting Pepti Tip21;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zbtb7a, Fbi1, Lrf, Zbtb7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjt18
symmetry Space Group: I 41 2 2
R_factor 0.229 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.850 65.850 162.603 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PR enzyme
Primary referenceStructure of the POZ domain of human LRF, a master regulator of oncogenesis., Schubot FD, Tropea JE, Waugh DS, Biochem Biophys Res Commun. 2006 Dec 8;351(1):1-6. Epub 2006 Oct 9. PMID:17052694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2if5.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2IF5
  • CSU: Contacts of Structural Units for 2IF5
  • Likely Quarternary Molecular Structure file(s) for 2IF5
  • Structure Factors (300 Kb)
  • Retrieve 2IF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IF5 from S2C, [Save to disk]
  • Re-refined 2if5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2IF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2IF5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IF5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2if5] [2if5_A]
  • SWISS-PROT database: [O95365]
  • Domain organization of [ZBT7A_HUMAN] by SWISSPFAM
  • Domain found in 2IF5: [BTB ] by SMART
    • Other resources with information on 2IF5
  • Community annotation for 2IF5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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