2IGV	Isomerase	date	Sep 25, 2006
title	Cyclophilin 3 Complexed With Dipeptide Ser-Pro
authors	D.Kan
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase 3 Chain: A Synonym: Ppiase, Rotamase, Cyclophilin-3 Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_taxid: 6239 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-5a
symmetry	Space Group: P 41 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.124 62.124 121.870 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.67 Å
ligand	PRO, SER	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Experimental Determination of van der Waals Energies in a Biological System., Wear MA, Kan D, Rabu A, Walkinshaw MD, Angew Chem Int Ed Engl. 2007 Jul 25;. PMID:17654646

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (2igv.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 2IGV CSU: Contacts of Structural Units for 2IGV Likely Quarternary Molecular Structure file(s) for 2IGV Structure Factors (1260 Kb) Retrieve 2IGV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2IGV from S2C, [Save to disk] Re-refined 2igv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2IGV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2IGV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2IGV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2igv_A] [2igv] SWISS-PROT database: [P52011] Domain organization of [CYP3_CAEEL] by SWISSPFAM

Other resources with information on 2IGV

Community annotation for 2IGV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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