2IGY Hydrolase date Sep 25, 2006
title Achiral, Cheap And Potent Inhibitors Of Plasmepsins II
authors L.Prade
compound source
Molecule: Plasmepsin-2
Chain: A, B
Synonym: Aspartic Hemoglobinase II, Pfapd
Ec: 3.4.23.39
Organism_scientific: Plasmodium Falciparum
Organism_common: Malaria Parasite P. Falciparum
Organism_taxid: 5833
symmetry Space Group: P 32 1 2
R_factor 0.211 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.099 161.099 73.932 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand A2T enzyme Hydrolase E.C.3.4.23.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAchiral, Cheap, and Potent Inhibitors of Plasmepsins I, II, and IV., Boss C, Corminboeuf O, Grisostomi C, Meyer S, Jones AF, Prade L, Binkert C, Fischli W, Weller T, Bur D, ChemMedChem. 2006 Nov 8;. PMID:17091526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (2igy.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (2igy.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2IGY
  • CSU: Contacts of Structural Units for 2IGY
  • Likely Quarternary Molecular Structure file(s) for 2IGY
  • Structure Factors (507 Kb)
  • Retrieve 2IGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IGY from S2C, [Save to disk]
  • Re-refined 2igy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IGY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2igy] [2igy_A] [2igy_B]
  • SWISS-PROT database: [P46925]
  • Domain organization of [PLM2_PLAFA] by SWISSPFAM
  • Other resources with information on 2IGY
  • Community annotation for 2IGY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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