2IQQ Lyase date Oct 14, 2006
title The Crystal Structure Of Iron, Sulfur-Dependent L-Serine Deh From Legionella Pneumophila Subsp. Pneumophila
authors Y.Kim, C.Hatzos, S.Moy, A.Joachimiak, Midwest Center For Structu Genomics (Mcsg)
compound source
Molecule: Iron, Sulfur-Dependent L-Serine Dehydratase
Chain: A, B
Fragment: Sdh_beta (Residues 4-161)
Synonym: Iron, Sulfur-Dependent
Ec: 4.3.1.17
Engineered: Yes
Organism_scientific: Legionella Pneumophila Subsp. Pneumoph
Organism_taxid: 272624
Strain: Philadelphia 1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.705 77.151 56.158 90.00 117.91 90.00
method X-Ray Diffractionresolution 2.66 Å
ligand MG, MSE enzyme Lyase E.C.4.3.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2iqq.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (2iqq.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (2iqq.pdb3.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2IQQ
  • CSU: Contacts of Structural Units for 2IQQ
  • Likely Quarternary Molecular Structure file(s) for 2IQQ
  • Structure Factors (239 Kb)
  • Retrieve 2IQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IQQ from S2C, [Save to disk]
  • Re-refined 2iqq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IQQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IQQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iqq_A] [2iqq] [2iqq_B]
  • SWISS-PROT database: [Q5ZXE1]
  • Domain organization of [Q5ZXE1_LEGPH] by SWISSPFAM
  • Other resources with information on 2IQQ
  • Community annotation for 2IQQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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