2IRM Transferase date Oct 15, 2006
title Crystal Structure Of Mitogen-Activated Protein Kinase Kinase Interacting Protein 1 From Anopheles Gambiae
authors X.Jin, J.B.Bonanno, L.Pelletier, J.C.Freeman, S.Wasserman, J.M.Sa S.K.Burley, L.Shapiro, New York Sgx Research Center For Struc Genomics (Nysgxrc)
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 7 Interacting Protein 1;
Chain: A
Engineered: Yes
 Organism_scientific: Anopheles Gambiae
Organism_common: African Malaria Mosquito
Organism_taxid: 7165
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bs-Psgx4
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.773 73.773 74.509 90.00 116.96 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2irm.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 2IRM
  • Likely Quarternary Molecular Structure file(s) for 2IRM
  • Structure Factors (108 Kb)
  • Retrieve 2IRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IRM from S2C, [Save to disk]
  • Re-refined 2irm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2IRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2IRM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IRM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2irm_A] [2irm]
  • SWISS-PROT database: [Q7QD46]
  • Domain organization of [Q7QD46_ANOGA] by SWISSPFAM
  • Domain found in 2IRM: [PP2Cc ] by SMART
    • Other resources with information on 2IRM
  • Community annotation for 2IRM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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